Publications

Publications

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  1. D. Krapf, E. Marinari, R. Metzler, G. Oshanin, X. Xu, and A. Squarcini "Power spectral density of a single Brownian trajectory: what one can and cannot learn from it", New J. Phys. (accepted, 2018)  pdf
  2. G. Sikora, A. Wyłomańska, J. Gajda, L. Solé, E.J. Akin, M.M. Tamkun, and D. Krapf, "Elucidating distinct ion channel populations on the surface of hippocampal neurons via single-particle tracking recurrence analysis", Phys. Rev. E 96, 062404 (2017)  pdf
  3. A. Weron, K. Burnecki, E.J. Akin, L. Solé, M. Balcerek, M.M. Tamkun, and D. Krapf, "Ergodicity breaking on the neuronal surface emerges from random switching between diffusive states", Sci. Rep. 7, 5404 (2017)  pdf, Suppl. Mat.
  4. S. Sadegh, J.L. Higgins, P.C. Mannion, M.M. Tamkun, and D. Krapf, "Plasma Membrane is Compartmentalized by a Self-Similar Cortical Actin Meshwork", Phys. Rev. X  7, 011031 (2017)  pdf, Suppl. Mat.
    Source story, Phys. Buzz story
  5. O. Wiggan, B. Schroder, D. Krapf, J.R. Bamburg, and J.G. DeLuca, "Cofilin regulates nuclear architecture through a myosin-II dependent mechanotransduction module", Sci. Rep.  7, 40953 (2017)  pdf
  6. E.J. Akin, L. Solé, B. Johnson, M. el Beheiry, J.-B. Masson, D. Krapf, and M.M. Tamkun, "Single-molecule imaging of Nav1.6 on the surface of hippocampal neurons reveals somatic nanoclusters", Biophys. J.  111, 1235 (2016)  pdf
  7. A. Alvau, M.A. Battistone, M.G. Gervasi, F.A. Navarrete, X. Xu, C. Sánchez-Cárdenas, J.L. De la Vega-Beltran, V.G. Da Ros, P. Greer, A. Darszon, D. Krapf, A.M. Salicioni, P. Cuasnicu, P.E. Visconti, "The tyrosine kinase FER is responsible for the capacitation-associated increase in tyrosine phosphorylation in murine sperm", Development  143, 2325 (2016) pdf
  8. D. Krapf, G. Campagnola, K. Nepal, and O.B. Peersen, "Strange kinetics of bulk-mediated diffusion on lipid bilayers", Phys. Chem. Chem. Phys. 18, 12633 (2016) pdf
  9. G. Campagnola, K. Nepal, B.W. Schroder, O.B. Peersen, and D. Krapf, "Superdiffusive motion of membrane-targeting C2 domains", Sci. Rep. 5, 17721 (2015)  pdf,  Suppl. Mat.
  10. P.D. Fox, C.J. Haberkorn, E.J. Akin, P.J. Seel, D. Krapf, and M.M. Tamkun, "Induction of stable endoplasmic reticulum/plasma membrane junctions by Kv2.1 potassium channels", J. Cell Sci. 128, 2096 (2015) pdf
  11. D. Krapf, "Mechanisms underlying anomalous diffusion in the plasma membrane", Current Topics in Membranes  75, 167 (2015) pdf
  12. D. Krapf, "Dynamic fluctuations in single-molecule biophysics experiments - Comment on Extracting physics of life at the molecular level: A review of single-molecule data analyses", Phys. Life Rev. 13, 148 (2015) pdf
  13. S. Sadegh, E. Barkai, and D. Krapf, "1/f noise for intermittent quantum dots exhibits non-stationarity and critical exponents" New J. Phys.  16, 113054 (2014)  pdf,  Supporting Material
  14. A.V. Weigel, M.M. Tamkun, and D. Krapf, "Quantifying the dynamic interactions between a clathrin-coated pit and cargo molecules" Proc. Natl. Acad. Sci. USA  110, E4591 (2013)  pdf,  Supporting Information
  15. P.D. Fox, C.J. Haberkorn, A.V. Weigel, J.L. Higgins, E.J. Akin, M.J. Kennedy, D. Krapf, and M.M. Tamkun, "Plasma membrane domains enriched in cortical endoplasmic reticulum function as membrane protein trafficking hubs", Mol. Biol. Cell  24, 2703 (2013) pdf
  16. D. Krapf, "Nonergodicity in nanoscale electrodes", Phys. Chem. Chem. Phys. 15, 459 (2013) pdf
  17. A.V. Weigel, P.D. Fox, E.J. Akin, K.H. Ecklund, M.M. Tamkun, and D. Krapf, "Size of cell-surface Kv2.1 domains is governed by growth fluctuations", Biophys. J.  103, 1727 (2012)  pdf,  Supporting Material
  18. E. Deutsch, A.V. Weigel, E.J. Akin, P. Fox, G. Hansen, C.J. Haberkorn, R. Loftus, D. Krapf, and M.M. Tamkun, "Kv2.1 cell surface clusters are insertion platforms for ion channel delivery to the plasma membrane", Mol. Biol. Cell  23, 2917 (2012) pdf,  Suppl. Mat.
  19. A.V. Weigel, S. Ragi, M.L. Reid, E.K.P. Chong, M.M. Tamkun, and D. Krapf, "Obstructed diffusion propagator analysis for single-particle tracking", Phys. Rev. E  85, 041924 (2012)  pdf,  Suppl. Mat.
  20. A.V. Weigel, B. Simon, M.M. Tamkun, and D. Krapf, "Ergodic and nonergodic processes coexist in the plasma membrane as observed by single molecule tracking", Proc. Natl. Acad. Sci. USA 108, 6438 (2011) pdf,  Supporting Information
  21. T. Wojcik and D. Krapf, "Solid-state nanopore recognition and measurement using Shannon entropy", IEEE Photonics J. 3, 337 (2011) pdf, MATLAB codes
  22. M.Y. Wu, R.M.M. Smeets, M. Zandbergen, U. Ziese, D. Krapf, P.E. Batson, N.H. Dekker, C. Dekker, and H.W. Zandbergen, "Control of Shape and Material Composition of Solid-State Nanopores", Nano Lett. 9, 479 (2009) pdf
  23. M.A.G. Zevenbergen, D. Krapf, M.R. Zuiddam, and S.G. Lemay, Mesoscopic concentration fluctuations in a fluidic nanocavity detected by redox cycling”, Nano Lett. 7, 384 (2007) pdf, cover page
  24. M.A.G. Zevenbergen, D. Krapf, M.R. Zuiddam, and S.G. Lemay, Giant amplification of redox current in a nanofluidic channel”, Proceedings of the 10th Micro Total Analysis Systems Conference, 654-656 (2006) Tokyo, Japan. pdf
  25. D. Krapf, B.M. Quinn, M.Y. Wu, H. Zandbergen, C. Dekker and S.G. Lemay, Experimental observation of nonlinear ionic transport at the nanometer scale”, Nano Lett. 6, 2531 (2006) pdf
  26. U.F. Keyser, B.N. Koeleman, S. van Dorp, D. Krapf, R.M.M. Smeets, S.G. Lemay, N.H. Dekker, and C. Dekker, “Direct force measurements on DNA in a solid-state nanopore”, Nature Physics 2, 473 (2006) pdf
  27. D. Krapf, M.Y. Wu, R.M.M. Smeets, H. Zandbergen, C. Dekker and S.G. Lemay, Fabrication and characterization of nanopore-based electrodes with radii down to 2 nm”, Nano Lett. 6, 105 (2006) pdf
  28. R.M.M. Smeets, U.F. Keyser, D. Krapf, M.Y. Wu, N.H. Dekker y C. Dekker, Salt-dependence of ion transport and DNA translocation through solid-state nanopores”, Nano Lett. 6, 89 (2006) pdf
  29. U.F. Keyser, D. Krapf, B.N. Koeleman, R.M.M. Smeets, N.H. Dekker, and C. Dekker, Nanopore tomography of a laser focus”, Nano Lett. 5, 2253 (2005) pdf
  30. A. Sa'ar, Y. Reichman, M. Dovrat, D. Krapf, J. Jedrzejewski, I. Balberg, Resonant coupling between surface vibrations and electronic states in silicon nanocrystals at the strong confinement regime”, Nano Lett. 5, 2443 (2005) pdf
  31. M.Y. Wu, D. Krapf, M. Zandbergen, H. Zandbergen, and P.E. Batson, Formation of nanopores in a SiN/SiO2 membrane with an electron beam”, Appl. Phys. Lett. 87, 113106 (2005) pdf
  32. S.G. Lemay, D.M. van den Broek, A.J. Storm, D. Krapf, R.M.M. Smeets, H.A. Heering, C. Dekker, Lithographically fabricated nanopore-based electrodes for electrochemistry”, Anal. Chem. 77, 1911 (2005) pdf
  33. D. Krapf, S.-H. Kan, U. Banin, O. Millo, and A. Sa´ar, Intersublevel optical transitions in InAs nanocrystals probed by photoinduced absorption spectroscopy: The Role of Thermal Activation”, Phys. Rev. B 69, 073301 (2004) pdf
  34. D. Krapf, A. Davidi, J. Shappir, and A. Sa´ar, Infrared photo-induced absorption spectroscopy of porous silicon”, Phys. St. Sol. A 197, 566 (2003) pdf
  35. D. Krapf, B. Adoram, K. L. Wang, J. Shappir and A. Sa´ar, Infrared multispectral detection using Si/SixGe1-x quantum well infrared photodetectors”, Appl. Phys. Lett. 78, 495 (2001) pdf
  36. B. Adoram, D. Krapf, M. Levy, R. Besserman, K. L. Wang, J. Shappir, and A. Sa´ar, Thermal relaxation processes in Si1-xGex/Si quantum wells studied by intersubband and inter-valence band optical spectroscopy”, Physica E 7, 255 (2000) pdf
  37. B. Adoram, D. Krapf, M. Levy, R. Besserman, S. Thomas, K. L. Wang, J. Shappir, and A. Sa´ar, Thermal relaxation processes probed by intersubband and intervalence-band transitions in Si/Si1-xGex multiple quantum wells”, Appl. Phys. Lett. 75, 2232 (1999) pdf
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