Dr. Brian Munsky

Publications

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  Refereed Journal Articles Top
23 B. Munsky, Z. Fox, G. Neuert, Integrating single-molecule experiments and discrete stochastic models to understand heterogeneous gene transcription dynamics, Methods, 85, 12-21, 2015  Read this online 2015
22 P Szmanska, N Gritti, J M Keegstra, M Soltani, B Munsky, Using noise to control heterogeneity of isogenic populstions in homogenous environments, Physical Biology, 12:4, 045003, 2015  Read this online 2015
21 B Munsky, G Neuert, From analog to digital models of gene regulation, Physical Biology, 12:4, 045004, 2015  Read this online 2015
20 O Resnekov, B Munsky, W S Hlavacek, Perspective on the q-bio Summer School and Conference 2007-2014 and beyond, Quantitative Biology, 2:1, 54-58, 2014 2014
19 A Senecal, B Munsky, F Proux, N Ly, F.E. Braye, C. Zimmer, F. Mueller, X. Darzacq, Transcription factors modulate c-Fos transcriptional bursts, Cell Reports, 8:1, 75-83, 2014 2014
18 D Shepherd, N Li, S Micheva-Viteva, B Munsky, E Hong-Geller, J Werner, Counting small RNA in pathogenic bacteria, Analytical Chemistry, 85:10, 4938-4943, 2013 2013
17 G Neuert, B Munsky, R-Z Tan, L Teytelman, M Khammash, A van Oudenaarden, Systematic Identification of signal-activated gene regulation, Science, 339:6119, 584-597, 2013 2013
16 C. Lou, B. Stanton, Y-J. Chen, B. Munsky, C. A. Voigt, Ribozyme-based "insulator parts" buffer synthetic circuits from genetic context, Nature Biotechnology, 30:11, 1137-1142, 2012 2012
15 B. Munsky*, G. Neuert*, A. van Oudenaarden, Using Gene Expression Noise to Understand Gene Regulation, Science, 336:6078, 183-187, 2012 2012
14 I Nemenman, S Gnanakaran, W Hlavacek, Y Jiang, B Munsky, M Wall and J Faeder. The Fifth Annual q-bio Conference on Cellular Information Processing. Physical Biology, 9, 050201, 2012 2012
13 B. Munsky and M. Khammash, Identification from stochastic cell-to-cell variation: A genetic switch case study, IET Systems Biology, 4:6, 356-366, 2010 2010
12 B. Munsky, I. Nemenman, and G. Bel, Specificity and Completion Time Distributions of Biochemical Processes, J. of Chemical Physics, 131:235103, Dec. 2009 2009
11 B. Munsky, B. Trinh and M. Khammash, Listening to the Noise: Random Fluctuations Reveal Gene Network Parameters, Molecular Systems Biology, 5:318, Oct. 2009 2009
10 B. Munsky and M. Khammash, Transient Analysis of Stochastic Switches and Trajectories with Ap- plications to Gene Regulatory Networks, IET Systems Biology, 2:5, 323-333, Sept. 2008 2008
9 B. Munsky and M. Khammash, The FSP Approach for the Analysis of Stochastic Noise in Gene Networks, IEEE Trans. Automat. Contr./IEEE Trans. Circuits and Systems: Part 1, 52:1, 201-214, Jan. 2008 2008
8 B. Munsky and M. Khammash, A Multiple Time Interval Finite State Projection Algorithm for the Solution to the Chemical Master Equation, J. Comp. Phys., 226:1, 818-835, 2007 2007
7 B. Munsky and M. Khammash, Analysis of Noise Induced Stochastic Fluctuations in Gene Regulatory Networks, J. SICE, 46:5, 405-411, 2007 2007
6 S. Peles, B. Munsky and M. Khammash, Reduction and Solution of the Chemical Master Equation Using Time Scale Separation and Finite State Projection, J. of Chemical Physics, 125:204104, 2006 2006
5 B. Munsky and M. Khammash, The Finite State Projection Algorithm for the Solution of the Chemical Master Equation, J. of Chemical Physics, 124:044104, 2006. 2006
4 B. Munsky, F. Gandhi and L. Tauszig, Analysis of Helicopter Blade-Vortex Interaction Noise with Flight Path or Attitude Modification, J. American Helicopter Society, 50:2, 123-137, 2005 2005
3 F. Gandhi and B. Munsky, Effectiveness of Active Constrained Layer Damping Treatments in Atten- uating Resonant Oscillations, J. of Vibration and Controls, 8:6, 747-775, 2002 2002
2 F. Gandhi and B. Munsky, Comparison of Damping Augmentation Mechanisms with Position and Velocity Feedback in Active Constrained Layer Treatments, J. of Intelligent Material Systems and Structures, 13:5, 259-326, 2002 2002
1 L. Centolanza, E. Smith and B. Munsky, Design, Fabrication, and Experimental Testing of an Induced- Shear Piezoelectric Actuator for Rotor Blade Trailing Edge Flaps, Smart Materials and Structures, 11, 24-35, 2002 2002
 
  Non-Refereed Journal Articles / Chapters / Proceedings / Transactions Top
8 J. Tapia, J. Faeder, B. Munsky, Adaptive Coarse-Graining for Transient and Quasi-Equilibrium Anal- yses of Stochastic Gene Regulation, Proc. of the 51st IEEE Conference on Decision and Control, 5361-5366, Maui, HI, 2012 2012
7 D. Shepherd, N. Li, E. Hong-Geller, B. Munsky, and J. Werner, New tools for discovering the role sRNA plays in cellular regulation, Proc. SPIE 8228:822808, San Francisco, CA, 2012 2012
6 B. Munsky and M. Khammash, Using Noise Transmission Properties to Identify Stochastic Gene Regulatory Networks, Proc. of the 47th IEEE Conference on Decision and Control, Cancun, Mexico, Dec. 2008 2008
5 B. Munsky and M. Khammash, Computation of Switch Time Distributions in Stochastic Gene Reg- ulatory Networks, Invited Paper--Proc. of the 27th American Control Conference, Seattle, WA, Jun. 2008 2008
4 P. Inglesias, M. Khammash, B. Munsky, E. Sontag and D. Del Vecchio, Systems Biology and Control -- A Tutorial, 46th IEEE Conference on Decision and Control, New Orleans, LA, Dec. 2007 2007
3 M. Khammash and B. Munsky, Systems Theory Applications in Biology: From Stochastic Chemical Kinetics to Deterministic Model Invalidation, Proc. of the European Control Conference, Kos, Greece, Jul. 2007 2007
2 B. Munsky and M. Khammash, Modeling and Analysis of a Bacterial Stochastic Switch, Proc. of the 14th Mediterranean Conference on Control and Automation, Ancona, Italy, 2006 2006
1 B. Munsky, A. Hernday, D. Low, and M. Khammash, Stochastic Modeling of the Pap Pili Epigenetic Switch, Proc. of Foundations of Systems Biology in Engineering, 145-148, Santa Barbara, CA, 2005 2005
 

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